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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36113578_36115043_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36113578 - 36115043
Intron Length:
1466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGATTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTGTTCTTGATT
Flanking Amino Acid:
LWPSDVIQQSWYTFLLLILF
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
76.1
0.59
0.9
73.2
36.9
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
69.4
0.69
1.2
77.73
39.7

Associated Gene:

Gene:
CCKAR
Ensembl Gene ID:
ENSAPLG00000025740
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031021
36112267 - 36119311
7045