Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36117614_36118389_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36117614 - 36118389

Intron Length:

776

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGTATA

5'SS Class:

strong_major

3'SS Sequence:

TGACAATTTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

TGATGTTTCACT

Flanking Amino Acid:

CEDDPPNSSRDLHQIIRILL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

87.3

29.4

Major BPS

78.6

0.71

79.6

32.9

Major PPT

69.4

0.44

58.7

45.9

Minor 5ss

38.2

-1.3

45.5

Minor BPS

50.2

0.09

2.2

73.14

43.8

Associated Gene:

Gene:

CCKAR

Ensembl Gene ID:

ENSAPLG00000025740

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031021

36112267 - 36119311

7045