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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36118535_36118620_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
36118535 - 36118620
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTCCTC
5'SS Class:
weak_major
3'SS Sequence:
CTCTTCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAC
U12 Branch Point Sequence:
AGATAGTTACAA
Flanking Amino Acid:
KELTSATASLELTCGSRRME
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.1
54.3
42.8
Major BPS
63.6
0.34
1.2
55.4
41.7
Major PPT
79
0.65
0.7
72.6
32.2
Minor 5ss
48.7
-0.1
2.8
65.1
41.5
Minor BPS
40
-0.7
2.3
49.94
40.3

Associated Gene:

Gene:
CCKAR
Ensembl Gene ID:
ENSAPLG00000025740
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031021
36112267 - 36119311
7045