About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36148749_36149394_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36148749 - 36149394
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTTTA
5'SS Class:
major
3'SS Sequence:
TACTTTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGTACTATACTT
Flanking Amino Acid:
LQNAVYSELNVFPSPCHPAA
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
73.1
34
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
73.6
0.53
1
71.8
38.1
Minor 5ss
40.3
-1.1
3
49.9
46.4
Minor BPS
48.5
-0
1.9
70.21
41

Associated Gene:

Gene:
TBC1D19
Ensembl Gene ID:
ENSAPLG00000007019
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031356
36138481 - 36182082
43602
ENSAPLT00000026893
36136908 - 36184329
47422
ENSAPLT00000007314
36138481 - 36184329
45849
ENSAPLT00000043672
36136908 - 36184329
47422
ENSAPLT00000042378
36138169 - 36184329
46161