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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36155825_36156741_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36155825 - 36156741
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
TTCCCTTAAAAA
Flanking Amino Acid:
TELSIPLAQKRPASEQKELL
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
83.9
0.76
0.9
81.2
36.5
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
53
0.09
1.8
65.66
40.9

Associated Gene:

Gene:
TBC1D19
Ensembl Gene ID:
ENSAPLG00000007019
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042378
36138169 - 36184329
46161
ENSAPLT00000031356
36138481 - 36182082
43602
ENSAPLT00000026893
36136908 - 36184329
47422
ENSAPLT00000043672
36136908 - 36184329
47422