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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36156806_36157717_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36156806 - 36157717
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
AATCTTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGGTTTTAACA
Flanking Amino Acid:
KWNEMGTDEPDLSLFRPVYA
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
27.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.3
0.64
0.9
74.8
38.9
Minor 5ss
38.2
-1.3
3
48.6
47.1
Minor BPS
69
0.59
1.3
74.03
38.5

Associated Gene:

Gene:
TBC1D19
Ensembl Gene ID:
ENSAPLG00000007019
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031356
36138481 - 36182082
43602
ENSAPLT00000026893
36136908 - 36184329
47422
ENSAPLT00000007314
36138481 - 36184329
45849
ENSAPLT00000043672
36136908 - 36184329
47422
ENSAPLT00000042378
36138169 - 36184329
46161