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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36157765_36160024_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36157765 - 36160024
Intron Length:
2260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TACCATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AATGACAGAACT
Flanking Amino Acid:
PVYAPKDFLEVLMNLRNPNY
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
68.3
0.41
1.1
71.3
38
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
46.4
-0.1
2
67.15
42.6

Associated Gene:

Gene:
TBC1D19
Ensembl Gene ID:
ENSAPLG00000007019
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031356
36138481 - 36182082
43602
ENSAPLT00000026893
36136908 - 36184329
47422
ENSAPLT00000007314
36138481 - 36184329
45849
ENSAPLT00000043672
36136908 - 36184329
47422
ENSAPLT00000042378
36138169 - 36184329
46161