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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36160136_36160953_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36160136 - 36160953
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
PLKVKDIPELKEDFSELGLN
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
TBC1D19
Ensembl Gene ID:
ENSAPLG00000007019
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042378
36138169 - 36184329
46161
ENSAPLT00000031356
36138481 - 36182082
43602
ENSAPLT00000026893
36136908 - 36184329
47422
ENSAPLT00000007314
36138481 - 36184329
45849
ENSAPLT00000043672
36136908 - 36184329
47422