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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36161027_36161774_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36161027 - 36161774
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTTATTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
GIDDSAQVPPEFFENEHVRV
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
77.1
32.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.7
0.67
0.8
73.1
37
Minor 5ss
31.5
-2.1
2.4
32.1
35.7
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
TBC1D19
Ensembl Gene ID:
ENSAPLG00000007019
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042378
36138169 - 36184329
46161
ENSAPLT00000031356
36138481 - 36182082
43602
ENSAPLT00000026893
36136908 - 36184329
47422
ENSAPLT00000007314
36138481 - 36184329
45849
ENSAPLT00000043672
36136908 - 36184329
47422