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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36161814_36163748_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36161814 - 36163748
Intron Length:
1935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AGTTTATTACTT
Flanking Amino Acid:
ENEHVRVGQKVLAEQDSAAA
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
78.9
36.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
96.3
1.04
0.5
92.6
17.2
Minor 5ss
34.8
-1.7
3.4
48.2
47.5
Minor BPS
51.8
0.13
1.8
71.8
39.3

Associated Gene:

Gene:
TBC1D19
Ensembl Gene ID:
ENSAPLG00000007019
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007314
36138481 - 36184329
45849
ENSAPLT00000043672
36136908 - 36184329
47422
ENSAPLT00000042378
36138169 - 36184329
46161
ENSAPLT00000031356
36138481 - 36182082
43602
ENSAPLT00000026893
36136908 - 36184329
47422