Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36163862_36169373_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36163862 - 36169373

Intron Length:

5512

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTAATTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TATTTTTTAATT

Flanking Amino Acid:

LILNISNQPEDILYYEQLKS

Intron Amino Acid Position:

248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

84.5

0.78

0.8

83.2

Minor 5ss

32.6

-2

3.1

44.2

Minor BPS

79.8

1.01

88.33

30.2

Associated Gene:

Gene:

TBC1D19

Ensembl Gene ID:

ENSAPLG00000007019

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031356

36138481 - 36182082

43602

ENSAPLT00000026893

36136908 - 36184329

47422

ENSAPLT00000007314

36138481 - 36184329

45849

ENSAPLT00000043672

36136908 - 36184329

47422

ENSAPLT00000042378

36138169 - 36184329

46161