Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36197051_36236245_F

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

36197051 - 36236245

Intron Length:

39195

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTATGCTAT

5'SS Class:

weak_minor

3'SS Sequence:

TTCCCCCCTTTAG|A

3'SS Class:

degenerate_minor

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

CTGTTCTGATTT

Flanking Amino Acid:

SHRWMHFPNLYPCSSLSPPC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.3

0.32

1.1

62.3

38.4

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

76.5

0.6

0.7

74.1

24.1

Minor 5ss

64.6

0.49

2.4

78.4

37.5

Minor BPS

50.3

0.09

1.7

67.76

43.8

Associated Gene:

Gene:

STIM2

Ensembl Gene ID:

ENSAPLG00000006859

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023421

36196936 - 36262915

65980