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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36253416_36254038_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36253416 - 36254038
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TTTTTGTTAACA
Flanking Amino Acid:
DSNVNGTTLPRIAVNEHAFM
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
27.1
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
84.4
0.77
0.9
81
35.4
Minor 5ss
38.7
-1.3
3
52
45.2
Minor BPS
72.4
0.7
2
86.69
32.1

Associated Gene:

Gene:
STIM2
Ensembl Gene ID:
ENSAPLG00000006859
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028197
36200555 - 36262915
62361
ENSAPLT00000023421
36196936 - 36262915
65980
ENSAPLT00000007144
36231789 - 36262915
31127
ENSAPLT00000034040
36200555 - 36262915
62361