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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36254155_36255144_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36254155 - 36255144
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
ATTCTCTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
ATTCTCTGTACA
Flanking Amino Acid:
LDVVLFGPLTRPPHNWMKDF
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.4
83
36.1
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
78.3
0.64
0.9
72.8
36.9
Minor 5ss
39.4
-1.2
2.8
52.7
37
Minor BPS
51.8
0.05
1.8
67.94
38.1

Associated Gene:

Gene:
STIM2
Ensembl Gene ID:
ENSAPLG00000006859
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023421
36196936 - 36262915
65980
ENSAPLT00000007144
36231789 - 36262915
31127
ENSAPLT00000034040
36200555 - 36262915
62361
ENSAPLT00000028197
36200555 - 36262915
62361