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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36255323_36256260_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
36255323 - 36256260
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCAATGTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTTCTCATTT
Flanking Amino Acid:
AEQSLLDLQERLEKAQEENR
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
57.6
0.17
1.2
56.9
42.4
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
57.9
0.32
1.8
78.15
38.6

Associated Gene:

Gene:
STIM2
Ensembl Gene ID:
ENSAPLG00000006859
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034040
36200555 - 36262915
62361
ENSAPLT00000028197
36200555 - 36262915
62361
ENSAPLT00000023421
36196936 - 36262915
65980
ENSAPLT00000007144
36231789 - 36262915
31127