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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36256439_36257030_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36256439 - 36257030
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGCA
5'SS Class:
major
3'SS Sequence:
TTTTCAATGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAATG
Flanking Amino Acid:
LKYAEEELVQVRMALKKAEK
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
67.7
37.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69.7
0.44
1
64
41.7
Minor 5ss
44.6
-0.6
2.9
59.3
45.3
Minor BPS
58.3
0.12
1.6
62.38
40.7

Associated Gene:

Gene:
STIM2
Ensembl Gene ID:
ENSAPLG00000006859
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023421
36196936 - 36262915
65980
ENSAPLT00000007144
36231789 - 36262915
31127
ENSAPLT00000034040
36200555 - 36262915
62361
ENSAPLT00000028197
36200555 - 36262915
62361