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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36257941_36259571_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36257941 - 36259571
Intron Length:
1631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCATCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
AACTGCTAAATT
Flanking Amino Acid:
DTPPIVSQFHEKNDKCTRGR
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
72.6
0.51
0.8
69.7
30.7
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
49.3
0.03
2.1
66.95
44.3

Associated Gene:

Gene:
STIM2
Ensembl Gene ID:
ENSAPLG00000006859
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023421
36196936 - 36262915
65980
ENSAPLT00000007144
36231789 - 36262915
31127
ENSAPLT00000028197
36200555 - 36262915
62361