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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36257941_36261431_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36257941 - 36261431
Intron Length:
3491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAC
U12 Branch Point Sequence:
TTTTCTTTGCCT
Flanking Amino Acid:
DTPPIVSQFHGSIVKPPSTL
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
66.1
0.4
1.2
69.1
37.9
Major PPT
81.6
0.71
0.8
80.5
31.5
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
53.3
0.19
3.5
90.81
33.2

Associated Gene:

Gene:
STIM2
Ensembl Gene ID:
ENSAPLG00000006859
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034040
36200555 - 36262915
62361