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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36261634_36262434_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36261634 - 36262434
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGGGGA
5'SS Class:
major
3'SS Sequence:
TGCTCTGACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTGCTCTGACT
Flanking Amino Acid:
EAIYFSADKQWEVQEAGSEC
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
56.9
42.2
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
67.6
0.4
1
65.4
40.2
Minor 5ss
27.7
-2.6
3.6
34.9
43.5
Minor BPS
61.8
0.45
1.8
83.72
37.5

Associated Gene:

Gene:
STIM2
Ensembl Gene ID:
ENSAPLG00000006859
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023421
36196936 - 36262915
65980
ENSAPLT00000007144
36231789 - 36262915
31127
ENSAPLT00000034040
36200555 - 36262915
62361
ENSAPLT00000028197
36200555 - 36262915
62361