Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36300109_36301730_F

Intron Information:

Intron Rank:

129297

Intron Class:

major

Intron Phase:

Intron Coordinates:

36300109 - 36301730

Intron Length:

1622

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCAAGCAAC

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTATGGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TGGTCTTTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.8

1.01

0.9

80.1

38.1

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

61.3

0.25

1.1

35.7

Minor 5ss

29.4

-2.4

3.9

42.1

Minor BPS

64.8

0.46

1.6

71.79

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019555

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025300

36299595 - 36302860

3266