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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36428330_36464246_F

Intron Information:

Intron Rank:
140424
Intron Class:
major
Intron Phase:
Intron Coordinates:
36428330 - 36464246
Intron Length:
35917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAAAAT
U12 Branch Point Sequence:
TGTGTCAAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
58
0.2
1.2
63.9
38.5
Major PPT
89.4
0.89
0.6
87.9
22.1
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
46.3
-0.2
2
60.1
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025559
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037469
36427317 - 36464745
37429