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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36435685_36441384_F

Intron Information:

Intron Rank:
132451
Intron Class:
major
Intron Phase:
Intron Coordinates:
36435685 - 36441384
Intron Length:
5700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCTCT
5'SS Class:
major
3'SS Sequence:
TTTAAAATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
70.2
36.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.3
0.55
1
63.9
45.7
Minor 5ss
47.1
-0.3
2.7
65.3
46.1
Minor BPS
59.8
0.38
1.7
78.79
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021173
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019921
36434113 - 36442544
8432