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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36453956_36462569_F

Intron Information:

Intron Rank:
140423
Intron Class:
major
Intron Phase:
Intron Coordinates:
36453956 - 36462569
Intron Length:
8614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTGTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
80.1
30.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.5
0.6
0.9
70
40.6
Minor 5ss
35
-1.7
3.2
48.2
47.9
Minor BPS
57.6
0.32
2
79.06
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025559
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018973
36453838 - 36462750
8913