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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36464354_36466539_F

Intron Information:

Intron Rank:
140421
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
36464354 - 36466539
Intron Length:
2186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ACCCCATAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TACCCCATAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
57.2
0.16
1
51.2
35.5
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
53.2
0.08
1.8
63.89
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025559
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018213
36464247 - 36536015
71769
ENSAPLT00000048293
36464346 - 36525073
60728