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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3659490_3678752_F

Intron Information:

Intron Rank:
134851
Intron Class:
major
Intron Phase:
Intron Coordinates:
3659490 - 3678752
Intron Length:
19263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATAGTCCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.2
0.61
0.8
69.1
36.7
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
53.7
0.19
1.7
71.43
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022539
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037035
3658419 - 3679313
20895