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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_36652741_36654295_R

Intron Information:

Intron Rank:
133432
Intron Class:
major
Intron Phase:
Intron Coordinates:
36652741 - 36654295
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TCCCTAACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.1
0.52
0.9
65.8
33.6
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
84.3
1.16
1.5
101.2
24.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028472
36652038 - 36654513
2476