About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37020464_37022956_F

Intron Information:

Intron Rank:
128833
Intron Class:
major
Intron Phase:
Intron Coordinates:
37020464 - 37022956
Intron Length:
2493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTAACTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
82.1
30.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.5
0.73
0.8
81.3
36.3
Minor 5ss
36.9
-1.5
2.9
47.6
42.5
Minor BPS
57
0.21
1.9
71.86
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019321
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030715
37020416 - 37026372
5957