About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37023017_37024276_F

Intron Information:

Intron Rank:
128834
Intron Class:
major
Intron Phase:
Intron Coordinates:
37023017 - 37024276
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATATTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
88.3
0.86
0.7
83.3
31.7
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
54.1
0.21
1.8
75.82
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019321
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030715
37020416 - 37026372
5957