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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37062868_37063177_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37062868 - 37063177
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TGCGGCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGCTCACAGCT
Flanking Amino Acid:
EAAPIDLRNPWA*
Intron Amino Acid Position:
1571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
71.8
0.49
1
61.3
44.6
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
42
-0.5
1.9
58.29
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026215
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024198
37062762 - 37075990
13229