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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37067789_37067996_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37067789 - 37067996
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCGCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAG
U12 Branch Point Sequence:
GCCACCTCCAGC
Flanking Amino Acid:
EDCRDGVAFQTRGAYLPFGA
Intron Amino Acid Position:
954

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
41.5
-0.5
1.6
49.7
44
Major PPT
73.1
0.52
0.8
65.6
30.3
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
40.1
-0.7
2.1
43.57
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026215
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024198
37062762 - 37075990
13229