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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37069378_37069610_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37069378 - 37069610
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGGGCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCCAA
U12 Branch Point Sequence:
TTTTCTTCTTCT
Flanking Amino Acid:
ILLLSISSSQNLQTNLAVAQ
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
50.4
0.01
1.4
64.5
42.8
Major PPT
67.3
0.39
1
57.5
43.2
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
42.4
-0.5
3.7
80.12
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026215
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024198
37062762 - 37075990
13229