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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37072828_37072938_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37072828 - 37072938
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TGCTTGCTAATG
Flanking Amino Acid:
AELSQCILLQARICPEETIL
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
78.3
0.64
0.7
72.6
25.8
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
44.1
-0.5
2.3
51.83
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026215
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024198
37062762 - 37075990
13229