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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37073702_37073972_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37073702 - 37073972
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CAGCCTTTGATG
Flanking Amino Acid:
STLLDCPEEEDKQAVIGAMT
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
78.9
0.65
0.8
69.6
36.7
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
49.8
-0.1
1.4
47.94
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026215
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024198
37062762 - 37075990
13229