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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37077502_37080331_F

Intron Information:

Intron Rank:
134138
Intron Class:
major
Intron Phase:
Intron Coordinates:
37077502 - 37080331
Intron Length:
2830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
CTAATTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
73.1
0.52
0.9
70.6
35.9
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
75
0.86
1.6
92.5
29.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022098
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038879
37077304 - 37083206
5903