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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37209239_37210910_R

Intron Information:

Intron Rank:
153100
Intron Class:
major
Intron Phase:
Intron Coordinates:
37209239 - 37210910
Intron Length:
1672

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
ACATTTCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTATTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
80.1
34
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.5
0.66
0.9
72.9
36.7
Minor 5ss
26.7
-2.7
3.8
39.6
39.8
Minor BPS
70.3
0.62
1.5
80.76
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032212
37197229 - 37211020
13792
ENSAPLT00000031974
37203387 - 37211020
7634