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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37211651_37211775_F

Intron Information:

Intron Rank:
126314
Intron Class:
major
Intron Phase:
Intron Coordinates:
37211651 - 37211775
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTCACTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81
0.7
0.8
74.1
35
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
54.6
0.12
1.7
65.95
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018046
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017732
37211101 - 37212026
926