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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37504108_37510557_R

Intron Information:

Intron Rank:
135223
Intron Class:
major
Intron Phase:
Intron Coordinates:
37504108 - 37510557
Intron Length:
6450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTTCTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1.1
78.8
30.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
83.7
0.76
0.8
77
30.6
Minor 5ss
36.8
-1.5
2.6
42.8
44
Minor BPS
78.7
0.98
1.6
95.57
31.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020131
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043275
37503760 - 37519897
16138