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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37518444_37519621_R

Intron Information:

Intron Rank:
135225
Intron Class:
major
Intron Phase:
Intron Coordinates:
37518444 - 37519621
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATAGCCATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.4
34.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
42.3
-0.8
3
57.2
47.1
Minor BPS
48.3
-0
1.9
68.18
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020131
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047330
37518295 - 37519897
1603