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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37610545_37617807_R

Intron Information:

Intron Rank:
142207
Intron Class:
major
Intron Phase:
Intron Coordinates:
37610545 - 37617807
Intron Length:
7263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TACTTGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
69.7
43.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.6
0.62
0.9
71.7
37.9
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
55
0.24
1.9
77
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023846
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027867
37610463 - 37655417
44955