About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37617683_37617807_R

Intron Information:

Intron Rank:
142215
Intron Class:
major
Intron Phase:
Intron Coordinates:
37617683 - 37617807
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTCACAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
69.7
43.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.5
0.6
0.9
74.7
40
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
48.5
-0
2.1
75.61
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023846
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041321
37617367 - 37655417
38051