Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37650535_37655008_R

Intron Information:

Intron Rank:

142204

Intron Class:

major

Intron Phase:

Intron Coordinates:

37650535 - 37655008

Intron Length:

4474

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACGGCT

5'SS Class:

major

3'SS Sequence:

TTTGCCTTTTAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACCAAA

U12 Branch Point Sequence:

TTGCCTTTTAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.2

70.5

38.9

Major BPS

48.4

-0.1

1.1

54.7

28.7

Major PPT

75.9

0.58

79.6

32.8

Minor 5ss

37.4

-1.4

3.6

56.7

47.6

Minor BPS

49.2

-0.2

1.8

57.89

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023846

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017743

37638847 - 37657431

18585

ENSAPLT00000041321

37617367 - 37655417

38051

ENSAPLT00000035870

37646299 - 37656547

10249

ENSAPLT00000029330

37646299 - 37655417

9119

ENSAPLT00000027867

37610463 - 37655417

44955

ENSAPLT00000043861

37638286 - 37655417

17132