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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37655106_37656874_R

Intron Information:

Intron Rank:
142205
Intron Class:
major
Intron Phase:
Intron Coordinates:
37655106 - 37656874
Intron Length:
1769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCCAG
U12 Branch Point Sequence:
TGCCCCCCAGCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
39.5
-0.6
1.5
43.7
39.4
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
43.1
-0.5
2
54.2
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023846
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017743
37638847 - 37657431
18585