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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37662105_37732776_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37662105 - 37732776
Intron Length:
70672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
GTTGCTTCAACT
Flanking Amino Acid:
CQASSKYGKQNNDTMWYFRC
Intron Amino Acid Position:
1069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
82.6
0.73
0.9
76.6
37.7
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
64.8
0.54
1.7
80.88
40.9

Associated Gene:

Gene:
PCDH7
Ensembl Gene ID:
ENSAPLG00000027438
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035367
37658901 - 37733267
74367