Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3776963_3790664_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3776963 - 3790664

Intron Length:

13702

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCAGAGGA

5'SS Class:

major

3'SS Sequence:

GCTTTTTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTTAA

U12 Branch Point Sequence:

GAAAGCTTAACT

Flanking Amino Acid:

LKKKPGTSLERTPVPSAEAF

Intron Amino Acid Position:

372

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.3

66.1

40.1

Major BPS

58.3

0.21

1.1

49.4

37.6

Major PPT

85.5

0.8

0.7

84.6

30.4

Minor 5ss

25.2

-2.9

30.6

42.6

Minor BPS

58.7

0.35

1.9

72.17

43.8

Associated Gene:

Gene:

CXXC4

Ensembl Gene ID:

ENSAPLG00000027306

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022173

3776918 - 3791777

14860