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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_37936937_37937679_R

Intron Information:

Intron Rank:
146455
Intron Class:
major
Intron Phase:
Intron Coordinates:
37936937 - 37937679
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTTTACATTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGTGTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.4
20.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
66.4
0.37
1.1
65.5
39.8
Minor 5ss
34.8
-1.7
2.8
44.9
43.2
Minor BPS
49.1
0.01
2.1
72.41
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026149
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044885
37936713 - 37947021
10309