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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38071206_38072227_R

Intron Information:

Intron Rank:
139411
Intron Class:
major
Intron Phase:
Intron Coordinates:
38071206 - 38072227
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCTAGA
5'SS Class:
major
3'SS Sequence:
TCTTTATAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTCTTTATAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
68.9
43.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.3
0.55
1
71.4
37.6
Minor 5ss
39.2
-1.2
2.9
51.4
45.1
Minor BPS
63.2
0.41
1.7
73.85
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022481
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041543
38071051 - 38074701
3651