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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38340_38645_F

Intron Information:

Intron Rank:
140274
Intron Class:
major
Intron Phase:
Intron Coordinates:
38340 - 38645
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCATGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTCTGTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
70.3
0.46
1
66.2
39.5
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
48.6
-0.2
2.4
66.31
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025464
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031840
38052 - 40155
2104