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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38390646_38413105_F

Intron Information:

Intron Rank:
150850
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
38390646 - 38413105
Intron Length:
22460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCTGCAG
5'SS Class:
weak_major
3'SS Sequence:
CTTTTTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
TTTTTCCCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55
0.12
1.3
45.6
43.8
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
73.5
0.53
1
74.9
27.8
Minor 5ss
25.5
-2.8
3.1
30.4
42.7
Minor BPS
49.5
-0.1
2
65.66
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031062
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017312
38390603 - 38413992
23390