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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38413162_38413536_F

Intron Information:

Intron Rank:
150851
Intron Class:
major
Intron Phase:
Intron Coordinates:
38413162 - 38413536
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
AGGTTTCCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
47
-0.1
1.8
63.68
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031062
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017312
38390603 - 38413992
23390