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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38525278_38528079_F

Intron Information:

Intron Rank:
137557
Intron Class:
major
Intron Phase:
Intron Coordinates:
38525278 - 38528079
Intron Length:
2802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
GTTATACTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
80.6
0.69
0.8
78.3
29.8
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
49.2
-0
1.9
66.99
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024065
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042969
38524497 - 38529802
5306